Featured Publication
Programmatic design and editing of cis-regulatory elements
bioRxiv, 2025.04.22.650035 (2025)
2025
tangermeme: A toolkit for understanding cis-regulatory logic using deep
learning models
bioRxiv, 2025.08.08.669296 (2025)
Tomtom-lite: accelerating Tomtom enables large-scale and real-time motif
similarity scoring
Bioinformatics 41 (11), btaf577 (2025)
Predictive design of tissue-specific mammalian enhancers that function in
vivo in the mouse embryo
bioRxiv, 2025.12.22.695948 (2025)
2024
Dissecting the cis-regulatory syntax of transcription initiation with deep
learning
bioRxiv (2024)